Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE21978

GEO first seen 2015

A global network of transcription factors, involving E2A, EBF1 and FOXO1, that orchestrates the B cell fate

Organism
Mus musculus
Samples
30
Type
Expression profiling by arra...
Submitted
2010-05-24

It is now established that the transcription factors E2A, EBF1 and Foxo 1 play critical roles in B cell development. Here we show that E2A and EBF1 bound regulatory elements present in the Foxo1 locus. E2A and EBF1 as well as E2A and Foxo1, in turn, were wired together by a vast spectrum of cis-regulatory codes. These associations were dynamic during developmental progression. Occupancy by the E2A isoform, E47, directly elevated the abundance as well as the pattern of histone H3K4 monomethylatio...

Provenance — who produced it, who reused it

Linked to 12 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Yin C LinSuchit JhunjhunwalaChristopher BennerSven HeinzEva WelinderRobert ManssonMikael SigvardssonJames HagmanCelso A EspinozaJanusz DutkowskiTrey IdekerChristopher K GlassCornelis Murre
Reused by

7 further papers cite this accession but reuse could not be confirmed.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 1.183 measured
pct q20 bases 85.4 measured
pct q30 bases 66.9 measured
gc content pct 46.1 measured
mean read length 36 measured
mean base quality 27.6 measured
adapter content pct 0.02 measured
duplication rate pct 5.39 measured
How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 66.9 measured ×1 0%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 100