GSE22765

GEO first seen 2013

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Exon-level expression profiling of ocular tissues 2013 · 103 cites

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

34/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.008 measured

pct q20 bases 78.9 measured

pct q30 bases 71.9 measured

gc content pct 53.9 measured

mean read length 130 measured

mean base quality 26.5 measured

adapter content pct 5.87 measured

duplication rate pct 7.16 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 34/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 71.9 measured ×1 10%

mean base quality 26.5 measured ×0.6 0%

adapter content pct 5.87 measured ×0.4 79%

duplication rate pct 7.16 measured ×0.4 100%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0