Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE24226

GEO first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

30/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Cunninghamia lanceolata (Chinese fir) bulk RNA-seq generated on an Illumina Genome Analyzer with ~35 bp average read length, representing early-generation short-read sequencing chemistry. Q30 rate of 71.5% and Q20 of 93% reflect moderate quality typical of that platform era. Useful for researchers exploring legacy conifer transcriptomics data or technical comparison studies.

Data type / assay
bulk-RNA-seq
Organism
Cunninghamia lanceolata
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 / 1 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 549604300 reported
total reads 15702980 reported
n content pct 0.07 measured
pct q20 bases 93 measured
pct q30 bases 71.5 measured
gc content pct 50.2 measured
mean read length 35 measured
mean base quality 29.4 measured
adapter content pct 0 measured
duplication rate pct 62.29 measured
supplementary file types FA reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 30/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 71.5 measured ×1 8%
mean base quality 29.4 measured ×0.6 23%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 62.29 measured ×0.4 28%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0