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DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
We measured the methylation status at 27,578 CpG sites using the Human Methylation27 DNA array in 77 HapMap Yoruba lymphoblastoid cell lines.
Provenance — who produced it, who reused it
Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
J T BellA A PaiJ K PickrellD J GaffneyR Pique-RegiJ F DegnerY GiladJ K Pritchard
Reused by
- Low-level processing of Illumina Infinium DNA Methylation BeadAr... 2013 · 1,002 cites
5 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
methylation
Organism
Homo sapiens
Files available
IDAT, TXT
Metrics (value · how obtained)
supplementary file types
IDAT, TXT
reported
QC cost
13 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently