GSE27841

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 5 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Zic2 Is an Enhancer-Binding Factor Required for Embryonic Stem C... 2015 · 117 cites

4 further papers cite this accession but reuse could not be confirmed.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

ChIP-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 1.339 measured

pct q20 bases 87.2 measured

pct q30 bases 84.1 measured

gc content pct 42.2 measured

mean read length 36 measured

mean base quality 34 measured

adapter content pct 0 measured

duplication rate pct 13.97 measured

How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.1 measured ×1 71%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0