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Replication initiation sites in cancer cells
Reads from massively parallel sequencing of RNA primed, short nascent strands from asynchronously growing cancer cells (K562, MCF7, HCT116).
Provenance — who produced it, who reused it
Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Mirit I AladjemHaiqing FuMelvenia M MartinMichael RyanRyangGuk KimOwen K Smith
Reused by
- Methylation of Histone H3 on Lysine 79 Associates with a Group o... 2013 · 100 cites
5 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
other
Organism
Homo sapiens
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
25 / 7 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
26362453067
reported
total reads
524373486
reported
supplementary file types
BED
reported
QC cost
15 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently