Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE30337

GEO first seen 2023

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Naked mole rat (Heterocephalus glaber) bulk-RNA-seq with 90 bp reads at 94.4% Q20 and 89% Q30 across 890 million bases enables comparative transcriptomics. The 47.8% GC and mean quality 34.2 support expression analysis in this unusual eusocial rodent; suitable for studying aging, cancer resistance, and social behavior at the molecular level.

Data type / assay
bulk-RNA-seq
Organism
Heterocephalus glaber
Files available
BEDGRAPH
Metrics (value · how obtained)
n content pct 0.01 measured
pct q20 bases 94.4 measured
pct q30 bases 89 measured
gc content pct 47.8 measured
mean read length 90 measured
mean base quality 34.2 measured
adapter content pct 0.26 measured
duplication rate pct 43.35 measured
supplementary file types BEDGRAPH reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89 measured ×1 95%
mean base quality 34.2 measured ×0.6 100%
adapter content pct 0.26 measured ×0.4 100%
duplication rate pct 43.35 measured ×0.4 70%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 93