Histone Modifications by ChIP-seq from ENCODE/LICR
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Yin Shen mailto:«email»). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:«email»). This track shows a comprehensive survey of cis-regulatory elements in the mouse genome by using ChIP-seq (Robertson et al., 2007) to identify transcription factor binding sites and chromatin modification profiles in many mouse (C57Bl/6) tissue...
Provenance — who produced it, who reused it
Linked to 35 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
- Transcription of the non-coding RNA upperhand controls Hand2 exp... 2016 · 354 cites
- Hierarchy within the mammary STAT5-driven Wap super-enhancer 2016 · 311 cites
- DNMT1 is essential for mammary and cancer stem cell maintenance... 2015 · 261 cites
- Tissue-specific CTCF–cohesin-mediated chromatin architecture del... 2017 · 238 cites
- Profiling of Pluripotency Factors in Single Cells and Early Embr... 2019 · 209 cites
- Identifying cis Elements for Spatiotemporal Control of Mammalian... 2018 · 199 cites
- Genome-wide analysis identifies a functional association of Tet1... 2013 · 176 cites
- Epigenomic analysis of gastrulation identifies a unique chromati... 2019 · 138 cites
- Simultaneous profiling of multiple chromatin proteins in the sam... 2021 · 122 cites
- Tissue-specific DNA demethylation is required for proper B-cell... 2016 · 106 cites
- Intragenic Enhancers Attenuate Host Gene Expression 2017 · 100 cites
- The S52F FOXF1 Mutation Inhibits STAT3 Signaling and Causes Alve... 2019 · 87 cites
- Long non-coding RNA identification over mouse brain development... 2013 · 79 cites
- SOX9 is dispensable for the initiation of epigenetic remodeling... 2018 · 76 cites
- A Dynamic Role of TBX3 in the Pluripotency Circuitry 2015 · 73 cites
20 further papers cite this accession but reuse could not be confirmed.
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0