Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE31056

GEO first seen 2017

A gene signature in histologically normal surgical margins is predictive of oral carcinoma recurrence

Organism
Homo sapiens
Samples
96
Type
Expression profiling by arra...
Submitted
2011-07-29

Samples were prospectively collected from patients with histologically normal surgical resection margins. 96 tissue samples (histologically normal margins, oral carcinoma and adjacent normal tissues) from 24 patients comprised the training set. Our study design was guided by the hypothesis that the expression of genes present in oral squamous cell carcinoma (OSCC) but not in healthy oral tissues would be indicative of recurrence in advance of histological alteration. We used meta-analysis of fiv...

Provenance — who produced it, who reused it

Linked to 35 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Patricia P ReisLevi WaldronBayardo Perez-OrdonezMelania PintilieNatalie N GalloniYali XuanNilva K CervigneGiles C WarnerAntti A MakitieColleen SimpsonDavid GoldsteinDale BrownRalph GilbertPatrick GullaneJonathan IrishIgor JurisicaSuzanne Kamel-Reid
Reused by

33 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
microarray-expr
Organism
Homo sapiens
Read type
not sequencing
Files available
CEL
Metrics (value · how obtained)
supplementary file types CEL reported
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently