Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE31234

GEO first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse 38 bp RNA-seq with severely compromised quality metrics (Q30: 53.4%, mean quality 24.5) and elevated N-content (0.87%), indicating poor sequencing run performance or low-quality starting material. This dataset offers limited analytical utility and requires careful validation before reuse. Caution: contains problematic quality data unsuitable for most standard analyses.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.871 measured
pct q20 bases 75.8 measured
pct q30 bases 53.4 measured
gc content pct 50.1 measured
mean read length 38 measured
mean base quality 24.5 measured
adapter content pct 0.05 measured
duplication rate pct 8.21 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 53.4 measured ×1 0%
mean base quality 24.5 measured ×0.6 0%
adapter content pct 0.05 measured ×0.4 100%
duplication rate pct 8.21 measured ×0.4 100%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0