Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE31653

GEO first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human 36 bp RNA-seq showing severely degraded quality metrics (Q30: 9%, mean 16) and zero GC content detected (GC: 0%), indicating data corruption, metadata error, or failed sequencing. This dataset is unsuitable for any downstream analysis without complete quality reassessment. Recommendation: verify with raw files or exclude from reuse analysis.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0 measured
pct q20 bases 41.6 measured
pct q30 bases 9 measured
gc content pct 0 measured
mean read length 36 measured
mean base quality 16 measured
adapter content pct 0 measured
duplication rate pct 3.66 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 9 measured ×1 0%
mean base quality 16 measured ×0.6 0%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 3.66 measured ×0.4 100%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0