Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE31755

GEO first seen 2014

Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/Davis/Harvard

Organism
Homo sapiens
Samples
32
Type
Genome binding/occupancy pro...
Submitted
2011-08-30

This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Peggy Farnham mailto:«email» for questions concerning data collection and usage and Philip Cayting mailto:«email» for data scoring and submission inquiries). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:«email»). This track, produced as part of the ENCODE Project, displays maps of histone modifications genome-wide using Ch...

Provenance — who produced it, who reused it

Linked to 14 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Peggy FarnhamMichael SnyderPhilip Cayting
Reused by

7 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Homo sapiens
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
66 / 32 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 74969652958 reported
total reads 2090262393 reported
supplementary file types BIGWIG, NARROWPEAK, TXT reported
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently