Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Florencia Pauli mailto:«email»). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:«email»). The ChIP-Seq method was used to assay chromatin fragments bound by specific or general transcription factors as described below. DNA isolated by ChIP-Seq was size-selected (~225 bp) and sequenced. Short reads of 25-36 bp were mapped to...
Provenance — who produced it, who reused it
Linked to 35 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
- cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq... 2019 · 535 cites
- Cancer-cell-secreted exosomal miR-105 promotes tumour growth thr... 2018 · 480 cites
- Genomic modelling of the ESR1 Y537S mutation for evaluating func... 2016 · 178 cites
- Subtelomeric CTCF and cohesin binding site organization using im... 2014 · 82 cites
- SeqGL Identifies Context-Dependent Binding Signals in Genome-Wid... 2015 · 77 cites
- Many chronological aging clocks can be found throughout the epig... 2021 · 71 cites
28 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently