GSE33887

GEO first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Mediator Complex Regulates Alternative mRNA Processing via the M... 2012 · 166 cites

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

ChIP-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.388 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 43.9 measured

mean read length 75 measured

mean base quality 30 measured

adapter content pct 0.36 measured

duplication rate pct 3.39 measured

How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0