GSE34626

GEO first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Adenosine deaminases that act on RNA induce reproducible changes... 2012 · 89 cites

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mouse 36 bp short-read RNA-seq with perfect Q30 composition (100%) and very low N-content (0.015%), representing high-confidence quality-filtered small-RNA or compact-transcript sequencing. Mean base quality of 30 reflects filtering rather than raw run quality. Applicable to mouse small-RNA or transcript subset expression studies.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.015 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 47.6 measured

mean read length 36 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 88.71 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 88.71 measured ×0.4 0%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0