Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE36025

GEO first seen 2013

Long RNA-seq from ENCODE/Cold Spring Harbor Lab

Organism
Mus musculus
Samples
30
Type
Expression profiling by high...
Submitted
2012-02-23

This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Carrie Davis mailto:«email» (experimental), Roderic Guigo mailto:«email» and lab (data processing) and Tom Gingeras mailto:«email» (primary investigator)). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:«email»). These tracks were generated by the ENCODE Consortia. They contain information about mouse RNAs > 200 nucleotides...

Provenance — who produced it, who reused it

Linked to 15 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Carrie DavisRoderic GuigoTom Gingeras
Reused by

7 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
125 / 30 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 1317251653128 reported
total reads 7163521139 reported
supplementary file types BAM, BEDRNAELEMENTS, BIGWIG, TXT reported
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently