GSE36394

GEO first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Long noncoding RNAs in <i>C. elegans</i> 2012 · 230 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Caenorhabditis elegans 36 bp short-read RNA-seq with exceptional quality metrics (Q30: 100%, mean quality 40, zero adapters), indicating meticulously processed small-RNA or highly selected transcript dataset. Low N-content (0.109%) and high base quality support precision transcriptomics. Searchable for C. elegans transcript or small-RNA expression with quality confidence.

Data type / assay

bulk-RNA-seq

Organism

Caenorhabditis elegans

Metrics (value · how obtained)

n content pct 0.109 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 43.9 measured

mean read length 36 measured

mean base quality 40 measured

adapter content pct 0 measured

duplication rate pct 23 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 40 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 23 measured ×0.4 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0