GSE36719

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Tracking the best reference genes for RT-qPCR data normalization... 2015 · 81 cites

Deep data QC

75/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Neurospora crassa OR74A 50 bp RNA-seq with perfect Q30 rate (100%) and low N-content (0.37%), consistent with quality-filtered fungal transcriptome data. Mean base quality of 30 paired with perfect Q30 suggests aggressive quality filtering. Relevant for fungal transcriptomics or organism-specific expression studies.

Data type / assay

bulk-RNA-seq

Organism

Neurospora crassa OR74A

Metrics (value · how obtained)

n content pct 0.365 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 52.1 measured

mean read length 50 measured

mean base quality 30 measured

adapter content pct 1.03 measured

duplication rate pct 53.39 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 75/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 1.03 measured ×0.4 100%

duplication rate pct 53.39 measured ×0.4 48%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0