Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE36985

GEO first seen 2016

Comparative profiling of chromatin state maps and transcription factor occupancy during human fetal and adult erythropoiesis

Organism
Homo sapiens
Samples
37
Type
Genome binding/occupancy pro...
Submitted
2012-04-02

We report the comparative investigation of genome-wide chromatin state maps, transcription factor (TF) occupancy, and gene expression profiles from developing red cell precursors at two developmental stages. Contrasting the similarities and differences between fetal and adult erythropoiesis provides important insights into the erythroid gene expression programs and gene regulatory networks. Specifically, comparative analyses of human erythropoiesis identify developmental stage-specific enhancers...

Provenance — who produced it, who reused it

Linked to 8 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Jian XuZhen ShaoStuart H Orkin
Reused by

5 further papers cite this accession but reuse could not be confirmed.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 44.5 measured
mean read length 35.1 measured
mean base quality 30 measured
adapter content pct 0 measured
duplication rate pct 0.03 measured
How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
QC cost 43 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0