DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
This track is produced as part of the mouse ENCODE Project. This track shows DNaseI sensitivity measured genome-wide in mouse tissues and cell lines using the Digital DNaseI methodology (see below), and DNaseI hypersensitive sites. DNaseI has long been used to map general chromatin accessibility and DNaseI hypersensitivity is a universal feature of active cis-regulatory sequences. The use of this method has led to the discovery of functional regulatory elements that include enhancers, insulators...
Provenance — who produced it, who reused it
Linked to 16 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
- Single-cell multi-omics sequencing of mouse early embryos and em... 2017 · 393 cites
- An ultra high-throughput method for single-cell joint analysis o... 2019 · 380 cites
- Histone-Fold Domain Protein NF-Y Promotes Chromatin Accessibilit... 2014 · 222 cites
- Identifying cis Elements for Spatiotemporal Control of Mammalian... 2018 · 199 cites
- Hippo Signaling Plays an Essential Role in Cell State Transition... 2018 · 184 cites
- Integrative single-cell analysis of transcriptome, DNA methylome... 2018 · 181 cites
- The IRF4 Gene Regulatory Module Functions as a Read-Write Integr... 2017 · 126 cites
- Enhancer accessibility and CTCF occupancy underlie asymmetric TA... 2019 · 113 cites
- Systematic analysis of intrinsic enhancer-promoter compatibility... 2022 · 108 cites
- Intragenic Enhancers Attenuate Host Gene Expression 2017 · 100 cites
6 further papers cite this accession but reuse could not be confirmed.
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ATAC-seq thresholds, weighted by its importance; nothing is hidden or subjective.
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0