GSE37206

GEO first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

INVOLVED IN DE NOVO 2-containing complex involved in RNA-directe... 2012 · 82 cites

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Arabidopsis thaliana 42 bp short-read RNA-seq with perfect Q30 composition (100%) despite modest mean base quality of 30, suggesting heavily filtered or quality-trimmed reads. Minimal adapter content and low N-content ensure clean data. Searchable for Arabidopsis high-purity small-RNA or transcript subset studies.

Data type / assay

bulk-RNA-seq

Organism

Arabidopsis thaliana

Metrics (value · how obtained)

n content pct 0.009 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 45.5 measured

mean read length 42 measured

mean base quality 30 measured

adapter content pct 0.03 measured

duplication rate pct 20.66 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0.03 measured ×0.4 100%

duplication rate pct 20.66 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0