Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE37418

GEO first seen 2019

Novel mutations target distinct subgroups of medulloblastoma.

Organism
Homo sapiens
Samples
76
Type
Expression profiling by arra...
Submitted
2012-04-19

Medulloblastoma is a malignant childhood brain tumour comprising four discrete subgroups. To identify mutations that drive medulloblastoma we sequenced the entire genomes of 37 tumours and matched normal blood. One hundred and thirty-six genes harbouring somatic mutations in this discovery set were sequenced in an additional 56 medulloblastomas. Recurrent mutations were detected in 41 genes not yet implicated in medulloblastoma: several target distinct components of the epigenetic machinery...

Provenance — who produced it, who reused it

Linked to 21 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Giles RobinsonMatthew ParkerTanya A KranenburgCharles LuXiang ChenLi DingTimothy N PhoenixErin HedlundLei WeiXiaoyan ZhuNader ChalhoubSuzanne J BakerRobert HuetherRichard KriwackiNatasha CurleyRadhika ThiruvenkatamJianmin WangGang WuMichael RuschXin HongJared BeckfordPankaj GuptaJing MaJohn EastonBhavin VadodariaArzu Onar-ThomasTong LinShaoyi LiStanley PoundsSteven PaughDavid ZhaoDaisuke KawauchiMartine F RousselDavid FinkelsteinDavid W EllisonChing C LauEric BouffetTim HassallSridharan GururanganRichard Cohn
Reused by

20 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
microarray-expr
Organism
Homo sapiens
Read type
not sequencing
Files available
CEL
Metrics (value · how obtained)
supplementary file types CEL reported
QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently