GSE38268

450k Analysis of 3 FF HPV+ and 3 FF HPV- HNSCC samples

Organism

Homo sapiens

Samples

6

Type

Methylation profiling by arr...

Submitted

2012-05-25

The methylation analysis of 3 FF HPV+ HNSCC samples and 21 FP HPV- HNSCC samples by Infinium HumanMethylation450 BeadChip

Provenance — who produced it, who reused it

Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by

Matthias LechnerTim FentonJames WestGareth WilsonAndrew FeberChristina ThirlwellHarpreet K DibraAmrita JayLee ButcherFiona GratrixNirali PatelFrancis VazPaul O'FlynnNicholas KalavrezosAndrew E TeschendorffChris BoshoffStephan Beck

Reused by

Identification and functional validation of HPV-mediated hyperme... 2013 · 130 cites
A framework for analyzing DNA methylation data from Illumina Inf... 2018 · 84 cites

4 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

methylation

Organism

Homo sapiens

Files available

CSV

Metrics (value · how obtained)

supplementary file types CSV reported

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently