Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE38377

GEO first seen 2016

Latent enhancers unveiled by stimulation expand and adapt the available cis-regulatory repertoire (ChIP-seq)

Organism
Mus musculus
Samples
115
Type
Genome binding/occupancy pro...
Submitted
2012-05-31

According to current models, transcription factors (TFs) activated by extracellular stimuli operate in the context of a pre-established enhancer repertoire induced and maintained by lineage-specific TFs. Here, we uncovered the existence of latent enhancers, defined as regions of the genome that in terminally differentiated cells are poorly accessible and lack the histone marks characteristic of enhancers, but readily acquire these features in response to extracellular cues. Stimulation of restin...

Provenance — who produced it, who reused it

Linked to 9 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Renato OstuniViviana PiccoloIros BarozziSara PollettiSerena GhislettiGioacchino Natoli
Reused by

3 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Mus musculus
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
125 / 115 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 215435437069 reported
total reads 4383687596 reported
supplementary file types BED reported
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently