Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE38666

GEO first seen 2013

Molecular Profiling provides evidence of the existence of two functionally distinct classes of ovarian cancer stroma

Organism
Homo sapiens
Samples
45
Type
Expression profiling by arra...
Submitted
2012-06-12

RNA microarray profiling of 45 tissue samples was carried out using the Affymetrix (U133) gene expression platform. Laser capture microdissection (LCM) was employed to isolate cancer cells from the tumors of 18 serous ovarian cancer patients (Cepi). For 7 of these patients, a matched set of surrounding cancer stroma (CS) was also collected. For controls, surface ovarian epithelial cells (OSE) were isolated from the normal (non-cancerous) ovaries of 12 individuals including matched sets of sample...

Provenance — who produced it, who reused it

Linked to 26 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Loukia N LiliLilya V MatyuninaL D WalkerBenedict B BenignoJohn F McDonald
Reused by

22 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
microarray-expr
Organism
Homo sapiens
Read type
not sequencing
Files available
CEL, CHP
Metrics (value · how obtained)
supplementary file types CEL, CHP reported
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently