Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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GSE39310

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Cucumis sativus (cucumber) bulk RNA-seq with unusually long 225.2 bp average reads and moderate quality metrics (Q30: 84.8%, mean 33.9), suggesting deep paired-end sequencing or concatenated reads. No adapter contamination indicates clean library. This long-read profile may offer superior splice-isoform resolution for plant transcriptomics studies.

Data type / assay
bulk-RNA-seq
Organism
Cucumis sativus
Metrics (value · how obtained)
n content pct 0.018 measured
pct q20 bases 94.1 measured
pct q30 bases 84.8 measured
gc content pct 42.3 measured
mean read length 225.2 measured
mean base quality 33.9 measured
adapter content pct 0 measured
duplication rate pct 24.29 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.8 measured ×1 74%
mean base quality 33.9 measured ×0.6 98%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 24.29 measured ×0.4 100%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0