GSE39618

GEO first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Comparative Transcriptome Analysis of Adipose Tissues Reveals th... 2013 · 119 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bos taurus (cattle) 101 bp paired-end RNA-seq with solid quality metrics (Q30: 90.9%, mean 35.6) and negligible adapter contamination, supporting livestock transcriptome applications. Balanced GC content (47.6%) ensures unbiased transcript detection. Searchable for bovine bulk RNA-seq or livestock expression genomics.

Data type / assay

bulk-RNA-seq

Organism

Bos taurus

Metrics (value · how obtained)

n content pct 0.001 measured

pct q20 bases 96.2 measured

pct q30 bases 90.9 measured

gc content pct 47.6 measured

mean read length 101 measured

mean base quality 35.6 measured

adapter content pct 0.07 measured

duplication rate pct 29.69 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.9 measured ×1 100%

mean base quality 35.6 measured ×0.6 100%

adapter content pct 0.07 measured ×0.4 100%

duplication rate pct 29.69 measured ×0.4 100%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0