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Provenance — who produced it, who reused it
Linked to 9 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
- Genomic modelling of the ESR1 Y537S mutation for evaluating func... 2016 · 178 cites
- Many chronological aging clocks can be found throughout the epig... 2021 · 71 cites
7 further papers cite this accession but reuse could not be confirmed.
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ChIP-seq
Organism
Mus musculus
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
38 / 38 runs
Completeness
100%
Metrics (value · how obtained)
gc sd
13.33
measured
checksum ok
yes
reported
total bases
39559014450
reported
total reads
936923017
reported
n content pct
0.014
measured
pct q20 bases
93
measured
sampled bases
24000000
measured
sampled reads
1000000
measured
gc content pct
52.2
measured
polyg tail pct
0
measured
read length sd
0
measured
quality dropoff
-2.7
measured
read length max
24
measured
read length min
24
measured
read length n50
24
measured
max base quality
27
measured
mean read length
24
measured
max n pct per pos
0.061
measured
mean base quality
25.5
measured
pct reads lt 100bp
100
measured
read length median
24
measured
adapter content pct
0.25
measured
median read quality
26.3
measured
duplication rate pct
34.98
measured
overrepresented top pct
9.38
measured
supplementary file types
BED, TXT
reported
QC cost
3.6 min compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0
Scientific quality
Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.
1 studies use it
1 reproduced mean score 100