Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE39812

GEO first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

34/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse 101 bp RNA-seq with moderate quality characteristics (Q30: 67.9%, mean 28.1), representing lower-tier sequencing reliability typical of cost-optimized studies. GC content of 50.4% is balanced; however, reduced base quality may limit SNP or variant detection accuracy. Applicable to mouse expression quantification where modest quality is acceptable.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.005 measured
pct q20 bases 78.2 measured
pct q30 bases 67.9 measured
gc content pct 50.4 measured
mean read length 101 measured
mean base quality 28.1 measured
adapter content pct 1.06 measured
duplication rate pct 20.5 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 34/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 67.9 measured ×1 0%
mean base quality 28.1 measured ×0.6 2%
adapter content pct 1.06 measured ×0.4 100%
duplication rate pct 20.5 measured ×0.4 100%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0