Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE40114

GEO first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human 50 bp single-end RNA-seq with good quality metrics (Q30: 91.2%, mean 36.4) and minimal adapter retention, typical of rapid or targeted expression surveys. Balanced GC composition supports unbiased measurement. Searchable for human bulk RNA-seq or focused transcriptome expression studies.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.004 measured
pct q20 bases 95.6 measured
pct q30 bases 91.2 measured
gc content pct 51 measured
mean read length 50 measured
mean base quality 36.4 measured
adapter content pct 0.07 measured
duplication rate pct 16.49 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.2 measured ×1 100%
mean base quality 36.4 measured ×0.6 100%
adapter content pct 0.07 measured ×0.4 100%
duplication rate pct 16.49 measured ×0.4 100%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0