GSE40572

GEO first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Reduced Insulin/IGF-1 Signaling Restores Germ Cell Immortality t... 2014 · 138 cites

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Caenorhabditis elegans 36 bp short-read RNA-seq with high Q30 rate (95.7%) and exceptional mean quality of 36.9, but notably depressed GC content (27.8%) reflecting either organism-specific transcript composition or small-RNA enrichment. Minimal adapters and N-content support reliable small-RNA expression profiling.

Data type / assay

bulk-RNA-seq

Organism

Caenorhabditis elegans

Metrics (value · how obtained)

n content pct 0.013 measured

pct q20 bases 98.5 measured

pct q30 bases 95.7 measured

gc content pct 27.8 measured

mean read length 36 measured

mean base quality 36.9 measured

adapter content pct 0 measured

duplication rate pct 79.5 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.7 measured ×1 100%

mean base quality 36.9 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 79.5 measured ×0.4 0%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0