GSE41244

GEO first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

The AHL- and BDSF-Dependent Quorum Sensing Systems Control Speci... 2012 · 81 cites

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Burkholderia cenocepacia H111 51 bp bacterial RNA-seq with perfect Q30 rate (100%) and mean quality of 30, representing quality-filtered microbial transcriptome data. High GC content (53.7%) is typical of bacterial genomes. Applicable to bacterial transcriptomics and functional genomics studies of this pathogenic species.

Data type / assay

bulk-RNA-seq

Organism

Burkholderia cenocepacia H111

Metrics (value · how obtained)

n content pct 0.002 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 53.7 measured

mean read length 51 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 91.3 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 91.3 measured ×0.4 0%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0