Corpus 1,283 assessed · 1,184 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
← Dataset search

GSE42379

GEO first seen 2013

Defining a molecular roadmap of cellular reprogramming into iPS cells [mRNA profiling]

Organism
Mus musculus
Samples
28
Type
Expression profiling by arra...
Submitted
2012-11-19

Factor induced reprogramming is a slow and inefficient process with only rare cells progressing towards induced pluripotent stem cells (iPSCs). Owing to these restraints, mechanistic studies have been limited to analyses of heterogeneous bulk populations undergoing reprogramming and partially reprogrammed cell lines. Here, by combining surface markers (Thy1, SSEA1) and an Oct4-GFP fluorescent reporter allele, we analyzed defined intermediate cell populations poised to becoming iPSCs at the trans...

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Jose M PoloEndre AnderssenRyan M WalshBenjamin A SchwarzChristian NefzgerSue M LimMarti BorkentEffie ApostolouSara AlaeiJeniffer CloutierOri Bar-NurSihem CheloufiMatthias StadtfeldMaria E FigueroaDaisy RobintonSridaran NatesanAri MelnickJinfang ZhuSridhar RamaswamyKonrad Hochedlinger
Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently