Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE4288

GEO first seen 2012

Polysomal, free mRNP, and total cellular mRNA of J774.1 before and after LPS stimulation

Organism
Mus musculus
Samples
36
Type
Expression profiling by arra...
Submitted
2006-02-21

Bacterial lipopolysaccharide(LPS) dramatically activates macrophages. So far, dozen of papers indicated that many proinflammatory molecules are transcriptionaly regulated during response. Despite of this,translational regulation is not fully elucidated especially in a comprehensive fashion. In this series, we investigated expression profiles of translation active (polysome) inactive (free mRNP) mRNAs of a typical mouse macrophage cell line, J774.1. Moreover, we also measured total cellular RNA l...

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Hiroshi KitamuraMichiyo TakayamaTomoko NakagawaMasatoshi ItoAtsushi HijikataOsamu Ohara
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
microarray-expr
Organism
Mus musculus
Read type
not sequencing
Files available
CEL, TXT
Metrics (value · how obtained)
supplementary file types CEL, TXT reported
QC cost 42 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently