GSE42880

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

5-hydroxymethylcytosine accumulation in postmitotic neurons resu... 2017 · 158 cites

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mouse 51 bp short-read RNA-seq with perfect Q30 composition (100%) and minimal N-content (0.05%), consistent with high-confidence quality-filtered dataset. Mean base quality of 30 reflects quality thresholding rather than raw platform performance. Relevant for mouse transcript profiling with stringent quality standards.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.05 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 46.3 measured

mean read length 51 measured

mean base quality 30 measured

adapter content pct 0.3 measured

duplication rate pct 13.15 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0.3 measured ×0.4 100%

duplication rate pct 13.15 measured ×0.4 100%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0