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Transcriptome sequencing of Brassica oleracea tissues
Deep sequencing of mRNA from seven different tissues of Brassica oleracea
Provenance — who produced it, who reused it
Linked to 11 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Yumei LiuZhiyuan FangWanxing WangXinhua YangWanshun LiChaobo TongShengyi Liu
Reused by
- Comprehensive genomic analysis of the CNGC gene family in Brassi... 2017 · 93 cites
- Genome-wide analysis of UDP-glycosyltransferase super family in... 2017 · 80 cites
9 further papers cite this accession but reuse could not be confirmed.
Deep data QC
33/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Brassica oleracea
Metrics (value · how obtained)
n content pct
6.152
measured
pct q20 bases
69.6
measured
pct q30 bases
47.1
measured
gc content pct
44.2
measured
mean read length
100
measured
mean base quality
22.9
measured
adapter content pct
0.27
measured
duplication rate pct
8.97
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 33/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
47.1
measured
×1
0%
mean base quality
22.9
measured
×0.6
0%
adapter content pct
0.27
measured
×0.4
100%
duplication rate pct
8.97
measured
×0.4
100%
QC cost
25 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0