GSE44020

GEO first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

The Draft Genome and Transcriptome of <i>Panagrellus redivivus</... 2013 · 72 cites

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Panagrellus redivivus 76 bp RNA-seq with lower quality metrics (Q30: 67.8%, mean 27.7) and notably high N-content (0.767%), indicating challenging sequencing conditions or low-complexity transcript pool from this small nematode. GC content of 52% is balanced. Represents small-genome or low-abundance transcriptome data with quality caveats.

Data type / assay

bulk-RNA-seq

Organism

Panagrellus redivivus

Metrics (value · how obtained)

n content pct 0.767 measured

pct q20 bases 75.9 measured

pct q30 bases 67.8 measured

gc content pct 52 measured

mean read length 76 measured

mean base quality 27.7 measured

adapter content pct 0.33 measured

duplication rate pct 16.31 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 67.8 measured ×1 0%

mean base quality 27.7 measured ×0.6 0%

adapter content pct 0.33 measured ×0.4 100%

duplication rate pct 16.31 measured ×0.4 100%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0