Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE44229

GEO first seen 2013

The Neuron-specific chromatin regulatory subunit BAF53b is necessary for synaptic plasticity and memory.

Organism
Mus musculus
Samples
24
Type
Expression profiling by high...
Submitted
2013-02-11

We performed an RNA Sequencing experiment on dorsal hippocampal tissue from four groups of animals: Baf53b+/- homecage (Baf53b+/- HC); Baf53b+/- behavior (Baf53b+/- Beh); wildtype homecage (WT HC); and wildtype behavior (WT Beh). Homecage animals were sacrificed directly from the animal's cage. Behavior animals were sacrificed thirty minutes following Object Location Memory training. The objective of this study was to examine activity regulated gene expression following a learning event (HC vs...

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Annie Vogel-CierniaMarcelo A WoodChristophe MagnanPierre Baldi
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.039 measured
pct q20 bases 95.4 measured
pct q30 bases 92.2 measured
gc content pct 49.9 measured
mean read length 50 measured
mean base quality 36.5 measured
adapter content pct 0.32 measured
duplication rate pct 21.05 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.2 measured ×1 100%
mean base quality 36.5 measured ×0.6 100%
adapter content pct 0.32 measured ×0.4 100%
duplication rate pct 21.05 measured ×0.4 100%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0