Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE44672

GEO first seen 2014

Activation and repression by oncogenic Myc shapes tumour-specific gene expression profiles

Organism
Homo sapiens; Mus musculus
Samples
66
Type
Genome binding/occupancy pro...
Submitted
2013-02-26

In mammalian cells, the Myc oncoprotein binds to thousands of promoters. During mitogenic stimulation of primary lymphocytes, Myc promotes an increase in expression of virtually all genes. In contrast, Myc-driven tumour cells differ from normal cells in expression of specific sets of up- and downregulated genes that have significant prognostic value. To understand this discrepancy, we studied the consequences of inducible expression and depletion of Myc in human cells and murine tumour models. C...

Provenance — who produced it, who reused it

Linked to 9 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Susanne WalzFrancesca LorenzinJennifer MortonKatrin WieseBjörn von EyssSteffi HeroldLukas RyzakHélène Dumay-OdelotSaadia KarimMarek BartkuhnFrederik RoelsTorsten WuestefeldMatthias FischerMartin TeichmannLars ZenderChia-Lin WeiOwen SamsonElmar WolfMartin Eilers
Reused by

6 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Homo sapiens; Mus musculus
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
70 / 66 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 21199430437 reported
total reads 633703635 reported
supplementary file types TXT reported
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently