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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
- Foxf Genes Integrate Tbx5 and Hedgehog Pathways in the Second He... 2014 · 101 cites
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ChIP-seq
Organism
Mus musculus
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 / 2 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
6060361200
reported
total reads
143384348
reported
n content pct
0.008
measured
pct q20 bases
98.2
measured
pct q30 bases
94.1
measured
gc content pct
45.5
measured
mean read length
44
measured
mean base quality
36.6
measured
adapter content pct
0.02
measured
duplication rate pct
7.54
measured
supplementary file types
BEDGRAPH
reported
How this grade was computed
The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
94.1
measured
×1
100%
QC cost
17 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0