Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE45393

GEO first seen 2013

Facilitates chromatin transcription complex is a marker and target of aggressive cancers with lower survival rates

Organism
Homo sapiens
Samples
12
Type
Genome binding/occupancy pro...
Submitted
2013-03-21

The Facilitates Chromatin Transcription (FACT) is involved in chromatin remodeling during transcription, replication and DNA repair and is considered to be an ubiquitously expressed complex that has no known associations with any disease. However, we discovered that FACT is expressed in very limited number of cells of adult mammalian organism, mostly presented by stem and undifferentiated cells. Here, we show that FACT is present in poorly differentiated aggressive cancers with an overall low su...

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Henry GarciaJeffrey C MiecznikowskiAlfiya SafinaMairead CommaneAnja RuusulehtoSami KilpinenRobert W LeachYan LiSeamus DeganAngela R OmilianOlga GuryanovaOlympia PapantonopoulouJianmin WangMichael BuckSong LiuCarl MorrisonKaterina Gurova
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
12 / 12 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 72187655368 reported
total reads 1427740644 reported
supplementary file types BED reported
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently