Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE46056

GEO first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human 50 bp single-end RNA-seq with strong quality characteristics (Q30: 94.1%, mean 37.1) and exceptional adapter cleanliness (<0.02%), indicating well-optimized library preparation. High base quality supports sensitive expression quantification. Relevant for human transcriptomics requiring stringent quality thresholds.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.014 measured
pct q20 bases 96.5 measured
pct q30 bases 94.1 measured
gc content pct 50.4 measured
mean read length 50 measured
mean base quality 37.1 measured
adapter content pct 0.02 measured
duplication rate pct 14.56 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.1 measured ×1 100%
mean base quality 37.1 measured ×0.6 100%
adapter content pct 0.02 measured ×0.4 100%
duplication rate pct 14.56 measured ×0.4 100%
QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0