Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE46691

GEO first seen 2014

Discovery and validation of a prostate cancer genomic classifier that predicts early metastasis following radical prostatectomy

Organism
Homo sapiens
Samples
545
Type
Expression profiling by arra...
Submitted
2013-05-07

Purpose: Clinicopathologic features and biochemical recurrence are sensitive, but not specific, predictors of metastatic disease and lethal prostate cancer. We hypothesize that a genomic expression signature detected in the primary tumor represents true biological potential of aggressive disease and provides improved prediction of early prostate cancer metastasis. Methods: A nested case-control design was used to select 639 patients from the Mayo Clinic tumor registry that underwent radical pr...

Provenance — who produced it, who reused it

Linked to 17 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Nicholas ErhoAnamaria CrisanIsmael A VergaraAnirban P MitraMercedeh GhadessiChristine BuerkiEric J BergstralhThomas KollmeyerStephanie FinkZaid HaddadBenedikt ZimmermannThomas SierocinskiKarla V BallmanTimothy J TrichePeter C BlackR J KarnesGeorge KleeElai DavicioniRobert B Jenkins
Reused by

12 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently