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SEQC Project
Organism
Homo sapiens; Rattus norvegicus; synthetic construct
Samples
4,521
Type
Expression profiling by arra...
Submitted
2013-06-10
This SuperSeries is composed of the SubSeries listed below.
Provenance — who produced it, who reused it
Linked to 15 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Leming ShiCharles WangChristopher E MasonMatthias FischerZhiyu PengScott S AuerbachJames C FuscoeWeida TongZhenqiang Su
Reused by
- voom: precision weights unlock linear model analysis tools for R... 2014 · 6,736 cites
- Comparison of RNA-seq and microarray-based models for clinical e... 2015 · 429 cites
- Gaining comprehensive biological insight into the transcriptome... 2017 · 405 cites
- The impact of read length on quantification of differentially ex... 2015 · 143 cites
8 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.
QC cost
23 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently