GSE48035

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

RNA-seq of human reference RNA samples using a thermostable grou... 2016 · 118 cites

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.186 measured

pct q20 bases 95.5 measured

pct q30 bases 92.8 measured

gc content pct 47.9 measured

mean read length 50 measured

mean base quality 36.8 measured

adapter content pct 0.18 measured

duplication rate pct 14.18 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.8 measured ×1 100%

mean base quality 36.8 measured ×0.6 100%

adapter content pct 0.18 measured ×0.4 100%

duplication rate pct 14.18 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0