GSE48419

GEO first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Ash1l Methylates Lys36 of Histone H3 Independently of Transcript... 2013 · 86 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mouse 51 bp short-read RNA-seq with excellent quality profile (Q30: 98.6%, mean 38.9) and minimal adapter content, representing high-confidence small-RNA or compact-transcript sequencing. Balanced GC composition (50.2%) ensures unbiased measurement. Ideal for mouse transcript detection with stringent quality requirements.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.002 measured

pct q20 bases 99.5 measured

pct q30 bases 98.6 measured

gc content pct 50.2 measured

mean read length 51 measured

mean base quality 38.9 measured

adapter content pct 0.14 measured

duplication rate pct 14.68 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.6 measured ×1 100%

mean base quality 38.9 measured ×0.6 100%

adapter content pct 0.14 measured ×0.4 100%

duplication rate pct 14.68 measured ×0.4 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0