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Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma (PDAC)
Determine methylation pattern in PDAC a genome-wide analysis was performed in a cohort of 167 PDAC and 29 adjacent pancreatic tissues samples using the Infinium 450k methylation arrays (Illumina).
Provenance — who produced it, who reused it
Linked to 8 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Katia NonesNic WaddellSarah SongAnn-Marie PatchKarin KassahnAmber JohnsJianmin WuDavid WoodPeter BaileyDavid MillerSuzanne ManningAngelika ChristCraig NourseMichelle ThomasClare WatsonMark PineseMark CowleyAldo ScarpaRita T LawlorJohn V PearsonAndrew V BiankinSean M Grimmond
Reused by
- VARIDT 1.0: variability of drug transporter database 2019 · 132 cites
- Identification of key regulators of pancreatic cancer progressio... 2016 · 85 cites
6 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
methylation
Organism
Homo sapiens
Files available
IDAT, TXT
Metrics (value · how obtained)
supplementary file types
IDAT, TXT
reported
QC cost
7 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently