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Nucleosome Positioning and Histone Modifications Define Relationships between Regulatory Elements and Nearby Gene Expression in Breast Epithelial Cells
We report the application of FAIRE seq and ChIP seq in breast cancer cell line, MDAMB231.
Provenance — who produced it, who reused it
Linked to 7 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
S K RhieG A Coetzee
Reused by
- Genetics and Expression Profile of the Tubulin Gene Superfamily... 2018 · 127 cites
- Portraying breast cancers with long noncoding RNAs 2016 · 116 cites
5 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ChIP-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 1000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
10 / 10 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
22636389246
reported
total reads
444158451
reported
supplementary file types
BED, BEDGRAPH, TXT
reported
QC cost
8 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently