GSE49844

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Smg6/Est1 licenses embryonic stem cell differentiation via nonse... 2015 · 134 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mouse 50 bp short-read RNA-seq with excellent quality indicators (Q30: 96.8%, mean 38) and minimal adapter content, reflecting high-fidelity small-insert library construction. Balanced GC composition (49.6%) supports unbiased measurement. Ideal for mouse transcript profiling with confidence in sequence accuracy.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.007 measured

pct q20 bases 98.8 measured

pct q30 bases 96.8 measured

gc content pct 49.6 measured

mean read length 50 measured

mean base quality 38 measured

adapter content pct 0.03 measured

duplication rate pct 17.28 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.8 measured ×1 100%

mean base quality 38 measured ×0.6 100%

adapter content pct 0.03 measured ×0.4 100%

duplication rate pct 17.28 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0