High-resolution mapping of ribosome footprints from Arabidopsis thaliana
Post-transcriptional gene regulation plays a significant role in the response to oxygen deprivation. Here, we utilized advances in next-generation sequencing technology to examine changes in transcriptional control, mRNA loading on to polysome, and regulation of ribosome activity during mRNA translation in 7-day-old Arabidopsis seedlings subjected to 2 hour hypoxia treatment.
Provenance — who produced it, who reused it
Linked to 7 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
- Long non-coding RNAs as a source of new peptides 2014 · 559 cites
- Super-resolution ribosome profiling reveals unannotated translat... 2016 · 287 cites
- NAD <sup>+</sup> -capped RNAs are widespread in the <i>Arabidops... 2019 · 111 cites
- riboCIRC: a comprehensive database of translatable circRNAs 2021 · 82 cites
3 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently